Hupo - Human Proteome Organisation

 

HUPO Education and Training programs

Among the several activities that HUPO is carrying out and supports, a particular effort has been dedicated to the creation and development of global educational programs that are capable of propagating proteomics standards and sustaining the collaborative research effort gathered under the HUPO banner. 

This page will be dedicated to the presentations given on the Educational & Training day(s) of HUPO Annual World Congresses.

Saturday, September 26, 2009, 8:30 AM – 4:00 PM, Room Pier 2+3

Co-Chairs : Thierry Rabilloud, iRTSV/LBBSI, CEA Grenoble; Angelika Gorg, Technische Universität München; and Ole Noerregaard Jensen, University of Southern Denmark

  Introduction:
 
Download
1. Thierry Rabilloud, iRTSV/LBBSI (CEA Grenoble)

Critical Analysis of the Current Proteomics Platform
Thierry.Rabilloud@cea.fr

  Area 1: Analyte Separation:
 
Download
2. Shabaz Mohammed (Utrecht University)

Liquid Chromatography
s.mohammed@uu.nl

Download
3. Loic Dayon (University of Geneva)

IEF Peptide Separation
Loic.Dayon@medecine.unige.ch

 Download
4. Oliver Drews (UCLA)
    odrews@mednet.ucla.edu

   Angelika Gorg (Technische Universität München)   Angelika.Gorg@wzw.tum.de

Protein Separation and 2D Electrophoresis
 

  Area 2: Securing Peptide Identification by Mass Spectrometry
Download
5. Mike MacCoss (University of Washington)

MS/MS and Shotgun Proteomics
maccoss@u.washington.edu
Download
6. Pierre-A Binz (Swiss Institute of Bioinformatics)
Database computing issues
Pierre-Alain.Binz@isb-sib.ch
 

Download

7. Roman Zubarev (Uppsala University)

High accuracy MS identification
roman.zubarev@angstrom.uu.se
 

 

Area 3: Beyond Simple Identification
 

Download

8. Bernd Kuster (Technische Universität München)

Quantification by MS
kuster@wzw.tum.de
 

Download

9. Ole Noerregaard Jensen (University of Southern Denmark)

Beyond simple translation: the challenge of modified peptides
jenseno@bmb.sdu.dk

 

  • HUPO 7th Annual World Congress, Amsterdam 2008

  • Saturday, August 16, 2008, 9:30 AM - 5:30 PM, RAI, Room Forum

    Chair : Angelika Görg / Thierry Rabilloud

      Welcome Address: Angelika Görg
    Chair, HUPO Education & Training Committee
    (Technical University of Munich, Germany)
    Download Gel-Based Proteomics: Angelika Görg
    (Technical University of Munich, Germany)
    Download Sample Preparation and Protein Detection: Thierry Rabilloud
    (CEA, France)
    N/A yet Shot Gun Proteomics: Mike MacCoss
    (University of Washington, USA)
    N/A yet Antibodies: Matthias Uhlen
    (Royal Institute of Technology, Sweden)
       
    Download Mass Spectrometry: Roman Zubarev
    (Upsala University, Sweden)
    Download Mass Spectrometry based Quantitative: Shabaz Mohammed
    (Netherlands Proteomics Centre (NPC))
    Download Post-Translational Modifications: Ole Jensen
    (University of Southern Denmark, Denmark)
     

    Download(1)

    Download(2)

    Mass Spectrometry related Bioinformatics
    • Session I, Comparison of search engines: Bas Van Breukelen
      (Netherlands Proteomics Centre (NPC))
    • Session II, Comparison of search engines: Pierre-Alain Binz
      (Swiss Institute of Bioinformatics, Geneva, Switzerland)

    Saturday, October 6, 2007, 9:00 AM - 6:45 PM, Jangbogo Hall 336

    Chair : Angelika Görg

      Welcome Address: Angelika Görg
    Chair, HUPO Education & Training Committee
    (Technical University of Munich, Germany)
    Download Overview of Proteomic Technologies: Michael J. Dunn
    (University College Dublin, Ireland)
    Download 2-D Electrophoresis: Angelika Görg
    (Technical University of Munich, Germany)
    Download MudPIT: Mike MacCoss
    (University of Washington, USA)
       
    Download Antibodies: Matthias Uhlen
    (Royal Institute of Technology, Sweden)
    Download (1)

    Download (2)

    Protein Identification by MS and MS/MS: Peter Roepstorff and Tine Thingholm
    (University of Southern Denmark, Denmark)
    Download PTM-Proteomics: Ole N. Jensen
    (University of Southern Denmark, Denmark)
       
    Download Protein Identification: Search Engines and Strategies: Pierre-Alain Binz
    (Swiss Institute of Bioinformatics, Geneva, Switzerland)
    Download Proteome Annotation: Resources and Tools: Sandra Orchard
    (European Bioinformatics Institute, Hinxton, UK)
    Download Results Dissemination: Guidelines, Formats, Databases: Henning Hermjakob
    (European Bioinformatics Institute, Hinxton, UK)

    Chair : Angelika Görg

    Saturday & Sunday, October 28 & 29, 2006, 9:00 AM - 6:00 PM, Regency Ballroom,  Level 3, Hyatt Hotel

    DAY 1 Welcome Address: Angelika Görg
    Chair, HUPO Education & Training Committee
    (Technical University of Munich, Germany)
    Download Opening Lecture: Proteomic Technologies: Michael J. Dunn
    (University College Dublin, Ireland)
    Download Sample Preparation for 2-D Page: Tom Berkelman
    (Bio-Rad, Hercules, CA)
    Download 2-D Page and DIGE: Reiner Westermeier
    (GE Healthcare, Munich, Germany
       
    Download Quantitative Proteomic Analysis; Daniel B. Martin;
    Institute of Systems Biology, Seattle, USA
    Download MudPIT; Mike MacCoss
    University of Washington, Seattle, WA
    Download Membrane Proteome Analysis: Peter James
    (University of Lund, Sweden)
    DAY 2  
    not available Antibodies: Mathias Uhlen
    (Royal Institute of Technology, Stockholm, Sweden)
    not available Protein and Antibody Arrays: Dolores Cahill
    (Conway Institute University College, Dublin, Ireland)
    not available MALDI Peptide Mass Fingerprinting: Peter Roepstorff
    (University of Southern Denmark, Odense, Denmark)
    not available Peptide Sequencing with LC-ESI MS/MS: Tine Thingholm
    (University of Southern Denmark, Odense, Denmark)
    not available PTM-Proteomics: Phosphoproteomics: Ole N. Jensen
    (University of Southern Denmark, Odense, Denmark)
    not available PTM-Proteomics: Glycoproteomics: Martin Larsen
    (University of Southern Denmark, Odense, Denmark)
    not available Bioinformatics for Proteomics: Pierre-Alan Binz
    (Swiss Institute of Bioinformatics, Geneva, Switzerland)
    Download Target Discovery and Validation in Clinical Proteomics: Jan Schnitzer
    (Sidney Kimmel Cancer Center, San Diego, CA)

     

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