B/D HPP
Human Liver Proteome Project (HLPP)
GET INVOLVED: Get in touch at office@hupo.org to learn more
Mission & Goals
The HLPP is a major international initiative dedicated to creating a comprehensive map of the human liver proteome. Its core purpose is to systematically identify and catalogue all liver proteins, including their various forms, modifications, and interactions, while mapping their spatiotemporal localization in both health and disease.
By correlating these protein expression patterns with conditions like hepatitis, cirrhosis, and cancer, the HLPP aims to fundamentally enhance our understanding of liver biology and disease mechanisms. This foundational knowledge is critical for discovering novel biomarkers for early diagnosis and for identifying new therapeutic targets.
The project’s importance lies in its commitment to advancing precision medicine for liver diseases, ultimately paving the way for improved diagnostics, personalized treatments, and preventative strategies through the development of a public database and the fostering of global collaborative networks.
In the pipeline:
- To identify and catalog all proteins expressed in the human liver, including their isoforms and post-translational modifications.
- Discover and validate new biomarkers for liver diseases facilitating early diagnosis, prognostic risk assessment and treatment decision.
- To identify and validate the drug-targetable proteins for further targeted treatment of liver diseases.
- Database Development: Create a publicly accessible database of the liver proteome, including protein sequences, structures, functions, and associated clinical data.
- Establish international collaborations with researchers, clinicians, institutions and industries to share knowledge, resources, and technologies, enhancing the project’s impact and reach.
We gratefully acknowledge all investigators, clinicians, patients, and collaborating institutions who have contributed to advancing the HLPP through data generation, technology development, and translational research. We especially thank the international partners within the Human Proteome Organization and the Human Liver Proteome Project community for their continuous leadership in standardizing liver proteomics, promoting multi-omics integration, and fostering global data sharing.
As liver diseases—including viral hepatitis, metabolic dysfunction–associated steatotic liver disease, cirrhosis, and hepatocellular carcinoma—remain major global health burdens, we warmly encourage research groups, clinicians, bioinformaticians, and industry partners worldwide to join HLPP. By contributing high-quality liver proteomic datasets, innovative technologies, and collaborative expertise, new partners can help accelerate the construction of comprehensive human liver proteome maps, advance biomarker discovery, and promote precision medicine for liver diseases.
HLPP Membership
Leadership Information
Co-Chair:
Ying Jiang
National Center of Protein Sciences (Beijing), Beijing 102206, China
Co-Chair:
Fernando J. Corrales,
Centro Nacional de Biotecnología – CSIC, Proteored-ISCIII, Madrid 28049, Spain
Executive Committee Members:
- Fuchu He (National Center of Protein Sciences (Beijing),China); former Chair;
- Zuhua Gao (University of British Columbia, Vancouver, BC, Canada); Liver pathologist;
- Andre Boonstra (Erasmus MC University Medical Center, Rotterdam, The Netherlands); Research on liver disease biomarkers;
- Felix Elortza(National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd), ISCIII, Madrid, Spain); Proteomics platform;
- Xiushan Yin (RocRock Biotechnology Co., Ltd, China); Translational proteomics;
- Feng Shen (Eastern Hepatobiliary Surgery Hospital, Shanghai, China); Liver surgery
- Qiang Gao (Zhongshan Hospital, Fudan University, Shanghai, China); Liver surgery and transplantation
- Junjie Xu (Sir Run-Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China); Liver surgery and transplantation
- Jinlin Hou (Nanfang Hospital, Southern Medical University, Guangzhou; China); Infectious diseases and liver diseases
- Xiaolong Liu (Mengchao Hepatobiliary Hospital of Fujian Medical University, Fuzhou, China); Diagnostic markers for liver diseases
- Yunping Zhu (National Center of Protein Sciences (Beijing),China); Proteome database
- Weijie Qin (National Center of Protein Sciences (Beijing),China); Spatial proteome
- Wantao Ying (National Center of Protein Sciences (Beijing),China); New technologies in proteomics
- Jinna Dai (National Clinical Research Center for Laboratory Medicine, The First Affiliated Hospital of China Medical University, Shenyang, China); Mass spectrometry precision medicine
Publications:
Liver cancer-associated changes to the proteome: what deserves clinical focus?
- Mato JM, Elortza F, Lu SC, Brun V, Paradela A, Corrales FJ. Expert Rev Proteomics. 2018 Sep;15(9):749-756. doi: 10.1080/14789450.2018.1521277. Epub 2018 Sep 19. PMID:30204005
Bioengineered PBGD variant improves the therapeutic index of gene therapy vectors for acute intermittent porphyria
- Serrano-Mendioroz I, Sampedro A, Serna N, de Salamanca RE, Sanz-Parra A, Corrales F, Berraondo P, Millet O, Fontanellas A. Hum Mol Genet. 2018 Nov 1;27(21):3688-3696. doi: 10.1093/hmg/ddy283. PMID:30085095
Abundance of Cytochromes in Hepatic Extracellular Vesicles Is Altered by Drugs Related With Drug-Induced Liver Injury
- Palomo L, Mleczko JE, Azkargorta M, Conde-Vancells J, González E, Elortza F, Royo F, Falcon-Perez JM. Hepatol Commun. 2018 Aug 23;2(9):1064-1079. doi: 10.1002/hep4.1210. eCollection 2018 Sep. PMID:30202821
SUMOylation regulates LKB1 localization and its oncogenic activity in liver cancer
- Zubiete-Franco I, García-Rodríguez JL, Lopitz-Otsoa F, Serrano-Macia M, Simon J, Fernández-Tussy P, Barbier-Torres L, Fernández-Ramos D, Gutiérrez-de-Juan V, López de Davalillo S, Carlevaris O, Beguiristain Gómez A, Villa E, Calvisi D, Martín C, Berra E, Aspichueta P, Beraza N, Varela-Rey M, Ávila M, Rodríguez MS, Mato JM, Díaz-Moreno I, Díaz-Quintana A, Delgado TC, Martínez-Chantar ML. EBioMedicine. 2018 Dec 26. pii: S2352-3964(18)30608-X. doi: 10.1016/j.ebiom.2018.12.031. [Epub ahead of print] PMID:30594553
Prohibitin 1 Acts As a Negative Regulator of Wingless/Integrated-Beta-Catenin Signaling in Murine Liver and Human Liver Cancer Cells
- Mavila N, Tang Y, Berlind J, Ramani K, Wang J, Mato JM, Lu SC. Hepatol Commun. 2018 Sep 27;2(12):1583-1600. doi: 10.1002/hep4.1257. eCollection 2018 Dec.PMID:30556043
Obeticholic Acid Modulates Serum Metabolites and Gene Signatures Characteristic of Human NASH and Attenuates Inflammation and Fibrosis Progression in Ldlr-/-Leiden Mice
- Morrison MC, Verschuren L, Salic K, Verheij J, Menke A, Wielinga PY, Iruarrizaga-Lejarreta M, Gole L, Yu WM, Turner S, Caspers MPM, Martínez-Arranz I, Pieterman E, Stoop R, van Koppen A, van den Hoek AM, Mato JM, Hanemaaijer R, Alonso C, Kleemann R. Hepatol Commun. 2018 Oct 29;2(12):1513-1532. doi: 10.1002/hep4.1270. eCollection 2018 Dec. PMID:30556039
The mitochondrial chaperone Prohibitin 1 negatively regulates interleukin-8 in human liver cancers
- Yang JW, Murray B, Barbier-Torres L, Liu T, Liu Z, Yang H, Fan W, Wang J, Li Y, Seki E, Mato JM, Lu SC. J Biol Chem. 2018 Dec 6. pii: jbc.RA118.004863. doi: 10.1074/jbc.RA118.004863. [Epub ahead of print] PMID:30523154
MiR-873-5p acts as an epigenetic regulator in early stages of liver fibrosis and cirrhosis
- Fernández-Ramos D, Fernández-Tussy P, Lopitz-Otsoa F, Gutiérrez-de-Juan V, Navasa N, Barbier-Torres L, Zubiete-Franco I, Simón J, Fernández AF, Arbelaiz A, Aransay AM, Lavín JL, Beraza N, Perugorria MJ, Banales JM, Villa E, Fraga MF, Anguita J, Avila MA, Berasain C, Iruzibieta P, Crespo J, Lu SC, Varela-Rey M, Mato JM, Delgado TC, Martínez-Chantar ML. Cell Death Dis. 2018 Sep 20;9(10):958. doi: 10.1038/s41419-018-1014-y. PMID:30237481
Repurposing ciclopirox as a pharmacological chaperone in a model of congenital erythropoietic porphyria
- Urquiza P, Laín A, Sanz-Parra A, Moreno J, Bernardo-Seisdedos G, Dubus P, González E, Gutiérrez-de-Juan V, García S, Eraña H, San Juan I, Macías I, Ben Bdira F, Pluta P, Ortega G, Oyarzábal J, González-Muñiz R, Rodríguez-Cuesta J, Anguita J, Díez E, Blouin JM, de Verneuil H, Mato JM, Richard E, Falcón-Pérez JM, Castilla J, Millet O. Sci Transl Med. 2018 Sep 19;10(459). pii: eaat7467. doi: 10.1126/scitranslmed.aat7467. PMID:30232228
Fine-tuning of SIRT1 expression is essential to protect the liver from cholestatic liver disease
- Blokker BA, Maijo M, Echeandia M, Galduroz M, Patterson AM, Ten A, Philo M, Schungel R, Gutierrez-de Juan V, Halilbasic E, Fuchs C, Le Gall G, Milkiewicz M, Milkiewicz P, Banales JM, Rushbrook SM, Mato JM, Trauner M, Müller M, Martínez-Chantar ML, Varela-Rey M, Beraza N. Hepatology. 2018 Sep 19. doi: 10.1002/hep.30275. [Epub ahead of print] PMID:30229970
Liver cancer-associated changes to the proteome: what deserves clinical focus?
- Mato JM, Elortza F, Lu SC, Brun V, Paradela A, Corrales FJ. Expert Rev Proteomics. 2018 Sep;15(9):749-756. doi: 10.1080/14789450.2018.1521277. Epub 2018 Sep 19. PMID:30204005
Metabolomic-based noninvasive serum test to diagnose nonalcoholic steatohepatitis: Results from discovery and validation cohorts
- Mayo R, Crespo J, Martínez-Arranz I, Banales JM, Arias M, Mincholé I, Aller de la Fuente R, Jimenez-Agüero R, Alonso C, de Luis DA, Vitek L, Stritesky J, Caballería J, Romero-Gómez M, Martín-Duce A, Mugüerza Huguet JM, Busteros-Moraza JI, Idowu MO, Castro A, Martínez-Chantar ML, Ortiz P, Bruha R, Lu SC, Bedossa P, Noureddin M, Sanyal AJ, Mato JM. Hepatol Commun. 2018 May 4;2(7):807-820. doi: 10.1002/hep4.1188. eCollection 2018 Jul. PMID:30027139
Mechanisms of MAFG Dysregulation in Cholestatic Liver Injury and Development of Liver Cancer
- Liu T, Yang H, Fan W, Tu J, Li TWH, Wang J, Shen H, Yang J, Xiong T, Steggerda J, Liu Z, Noureddin M, Maldonado SS, Annamalai A, Seki E, Mato JM, Lu SC. Gastroenterology. 2018 Aug;155(2):557-571.e14. doi: 10.1053/j.gastro.2018.04.032. Epub 2018 May 5. PMID:29733835
Use of a metabolomic approach to non-invasively diagnose non-alcoholic fatty liver disease in patients with type 2 diabetes mellitus
- Bril F, Millán L, Kalavalapalli S, McPhaul MJ, Caulfield MP, Martinez-Arranz I, Alonso C, Ortiz Betes P, Mato JM, Cusi K. Diabetes Obes Metab. 2018 Jul;20(7):1702-1709. doi: 10.1111/dom.13285. Epub 2018 Apr 14. PMID:29527789
Direct-acting antivirals-based therapy decreases hepatic fibrosis serum biomarker microfibrillar-associated protein 4 in hepatitis C patients
- Mölleken C, Ahrens M, Schlosser A, Dietz J, Eisenacher M, Meyer HE, Schmiegel W, Holmskov U, Sarrazin C, Sorensen GL, Sitek B, Bracht T. Clin Mol Hepatol. 2018 Nov 19. doi: 10.3350/cmh.2018.0029. [Epub ahead of print] PMID:30449076
Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours
- Nwosu ZC, Battello N, Rothley M, Piorońska W, Sitek B, Ebert MP, Hofmann U, Sleeman J, Wölfl S, Meyer C, Megger DA, Dooley S. J Exp Clin Cancer Res. 2018 Sep 3;37(1):211. doi: 10.1186/s13046-018-0872-6. Erratum in: J Exp Clin Cancer Res. 2018 Nov 2;37(1):267. PMID:30176945
A MAA-based dosimetric study in patients with intrahepatic cholangiocarcinoma treated with a combination of chemotherapy and 90Y-loaded glass microsphere selective internal radiation therapy
- Manceau V, Palard X, Rolland Y, Pracht M, Le Sourd S, Laffont S, Boudjema K, Lievre A, Mesbah H, Haumont LA, Lenoir L, Brun V, Uguen T, Edeline J, Garin E. Eur J Nucl Med Mol Imaging. 2018 Sep;45(10):1731-1741. doi: 10.1007/s00259-018-3990-7. Epub 2018 Mar 20. PMID:29560519
Direct Quantification of Cytochromes P450 and Drug Transporters-A Rapid, Targeted Mass Spectrometry-Based Immunoassay Panel for Tissues and Cell Culture Lysates
- Weiß F, Hammer HS, Klein K, Planatscher H, Zanger UM, Norén A, Wegler C, Artursson P, Joos TO, Poetz O. Drug Metab Dispos. 2018 Apr;46(4):387-396. doi: 10.1124/dmd.117.078626. Epub 2018 Jan 17. PMID:29343608
Mixture effects of two plant protection products in liver cell lines
- Zahn E, Wolfrum J, Knebel C, Heise T, Weiß F, Poetz O, Marx-Stoelting P, Rieke S. Food Chem Toxicol. 2018 Feb;112:299-309. doi: 10.1016/j.fct.2017.12.067. Epub 2017 Dec 30. PMID:29294346
Targeting Endothelial Erk1/2-Akt Axis as a Regeneration Strategy to Bypass Fibrosis during Chronic Liver Injury in Mice
- Lao Y, Li Y, Zhang P, Shao Q, Lin W, Qiu B, Lv Y, Tang L, Su S, Zhang H, Tian C, Sun A, Wei H, Zhang P, Wu Y, Jiang Y, He F. Mol Ther. 2018 Dec 5;26(12):2779-2797. doi: 10.1016/j.ymthe.2018.08.016. Epub 2018 Aug 24. PMID:30266653
ER-associated ubiquitin ligase HRD1 programs liver metabolism by targeting multiple metabolic enzymes
- Wei J, Yuan Y, Chen L, Xu Y, Zhang Y, Wang Y, Yang Y, Peek CB, Diebold L, Yang Y, Gao B, Jin C, Melo-Cardenas J, Chandel NS, Zhang DD, Pan H, Zhang K, Wang J, He F, Fang D. Nat Commun. 2018 Sep 10;9(1):3659. doi: 10.1038/s41467-018-06091-7. PMID:30201971
Artificial MicroRNA-Mediated Tgfbr2 and Pdgfrb Co-Silencing Ameliorates Carbon Tetrachloride-Induced Hepatic Fibrosis in Mice
- Jiang Y, Zhao Y, He F, Wang H. Hum Gene Ther. 2018 Nov 13. doi: 10.1089/hum.2018.047. [Epub ahead of print] PMID:30024280
Germline Duplication of SNORA18L5 Increases Risk for HBV-related Hepatocellular Carcinoma by Altering Localization of Ribosomal Proteins and Decreasing Levels
- Cao P, Yang A, Wang R, Xia X, Zhai Y, Li Y, Yang F, Cui Y, Xie W, Liu Y, Liu T, Jia W, Jiang Z, Li Z, Han Y, Gao C, Song Q, Xie B, Zhang L, Zhang H, Zhang J, Shen X, Yuan Y, Yu F, Wang Y, Xu J, Ma Y, Mo Z, Yu W, He F, Zhou G. Gastroenterology. 2018 Aug;155(2):542-556. doi: 10.1053/j.gastro.2018.04.020. Epub 2018 Apr 24. PMID:29702115
A proteomics landscape of circadian clock in mouse liver
- Wang Y, Song L, Liu M, Ge R, Zhou Q, Liu W, Li R, Qie J, Zhen B, Wang Y, He F, Qin J, Ding C. Nat Commun. 2018 Apr 19;9(1):1553. doi: 10.1038/s41467-018-03898-2. PMID:29674717
Dysregulated Response of Follicular Helper T Cells to Hepatitis B Surface Antigen Promotes HBV Persistence in Mice and Associates With Outcomes of Patients
- Wang X, Dong Q, Li Q, Li Y, Zhao D, Sun J, Fu J, Meng F, Lin H, Luan J, Liu B, Wang M, Wang FS, He F, Tang L. Gastroenterology. 2018 Jun;154(8):2222-2236. doi: 10.1053/j.gastro.2018.03.021. Epub 2018 Mar 12. PMID:29544722